Mini-symposium on BioImage Informatics 2017, June 27 @ Rennes

We are happy to announce the 2017 edition of the mini-symposium on Bioimage Informatics, organized by the GdR ImaBio and France Bioimaging.

It will take place this June 27th in Rennes, France, from 9AM to 10PM.

Program (updated June 21st):

9am – 10.30am: Big Data & Machine learning

  • Sébastien Collin, “Quantitative 3D-Imaging for Cell Biology and Ecology of Environmental Microbial Eukaryotes”
  • Peter Naylor, “Nuclei segmentation in Histopathology Images Using Deep Neural Networks”
  • Vedran Vukotić, “Deep neural architectures for automatic representation learning from multimedia multimodal data
  • Emmanuel Moebel, “Exploring cellular landscapes with deep learning”

11am – 12.30pm: Multi-scale approaches & Biophysics 

  • Perrine Paul-Gilloteaux, “Analysis methods and software for correlative microscopies and multiscale imaging”
  • Yann le Cunff, “Inferring biophysics of cell division from centrosome trajectories”
  • Stefano Zapperi, “Bursts of activity in collective cell migration”

12.30 – 1.45pm: Lunch break

1.45 – 2pm: Presentation of the GdR ImaBio & FranceBioImaging

2pm – 4pm: Single Molecule techniques

  • Jean Baptiste Sibarita, “Quantitative multicolors single-molecule localization microscopy”
  • Denis Fortun, “Multichannel reconstruction from multiple particles to localize proteins in 3D fluorescence microscopy with isotropic resolution”
  • Mohamed El Beheiry, “Mapping of Single-Molecule Dynamics : Where we’re at and where we’re going”
  • Frederic Lavancier, “A fast automatic colocalization  method for 3D live cell and super-resolution microscopy”

4 – 4.30pm: Coffee break

4.30 – 6pm: Imaging and modelling

  • Mathieu Pinot, “Role of mechanical tensile forces on cell fate acquisition”
  • Sylvain Cussat-Blanc, “In-silico therapeutic optimization in multicellular tumor spheroids”

This year’s edition will also feature an Happy Hour Poster session in the evening (7-10PM). Posters will have to be introduced by their presenters in the form of a short (~2-minute) oral presentation prior to the session. You also have the possibility to come and showcase your latest bioimage analysis algorithm/software in an open and friendly atmosphere.


The event will take place at the INRIA, Rennes campus. The full address is:

Campus de Beaulieu
35042 Rennes Cedex France

Transport and logistics information are available here:

Organising Committee

  • Jérôme Boulanger (Institut Curie / CNRS UMR 144)
  • Alexandre Dufour (Institut Pasteur / CNRS UMR 3691)
  • Charles Kervrann (INRIA Rennes)
  • Thomas Walter (Mines ParisTech / Institut Curie / INSERM U900)
  • Pierre Weiss (ITAV USR 3505 / IMT UMR 5219 / University Paul Sabatier)


Registration is free but mandatory. Last few seats remaining, registration closing soon!

NB: The number of seats is limited to 60, therefore registrations may close earlier.

Registration form

NOTE to GdR members: please login on this site first before registering (this will fill out some of the details for you already). You are warmly invited to register if you do not yet have an account, this will keep you updated on all future GdR events
Nom de famille
University, institution, company etc.
Laboratory, team, etc.
Code postal
NB: presenters will be asked to give a short (1 minute) showcase of their poster before the poster session starts.
Meals are free of charge, but require some logistics. Thank you for you cooperation.

MiFoBio, the school of Functional Microscopy in Biology approaching fast!

MiFoBio, the school of functional microscopy in Biology is approaching fast!

The school’s 2016 session will be held from 30 September to 7 October 2016 at Club Belambra Seignosse.


Did you like Mifobio 2014, so do not miss Mifobio 2016!

Program available on :

Over 90 different workshops will focus on the most advances technologies in the represented fields (ultra-high resolution, light-sheet, adaptive & non-linear optics, correlative light-electron microscopy, etc.).

You can replay Mifobio 2014 by visualizing all courses, after login on :

Lasershow (Christian Hubert)

For those who miss Mifobio 2014, a brief overview of the seminar Eric Betzig who received the Nobel Prize in the same year!

GdR Mini-symposium on BioImage Informatics 2015, November 23-24 @ Institut Pasteur Paris

We are happy to announce the 3rd edition of the annual symposium on Bioimage Informatics, organized by the GdR 2588 (Functional Microscopy of living organisms) and supported this year by France Bioimaging.

UPDATE: Registration is now closed. See you all on the 23rd!

This third edition of the event will feature two sessions covering rapidly developing topics of Bioimage Informatics:

  • Computational Imaging (Nov. 23rd): this session aims at gathering the computational and physical approaches that support imaging methods. This includes talks on inverse problems, compressed sensing, source separation and super-resolution. Presented applications will include many different imaging techniques including confocal microscopy, super resolution microscopy, Optical Projection Tomography, TIRF microscopy.
  • Computational Phenotyping (Nov. 24th): this session focuses on the automatic analysis of imaging data to derive biological information across different scales. This involves techniques for image segmentation and quantification, machine learning and statistics. Applications will cover different scales of organization (from cells to organisms) and will include examples from High Content Screening, plant phenotyping and spatial transcriptomics.